- Characterizing CT-derived Biomechanical Differences in Bronchovascular Bundles Across CT Density Gradient Texture Tertiles in SPIROMICS
HA Awan, EK Hayes, MFA Chaudhary, EA Hoffman, J Guo, SE Gerard, AP Comellas, M Arjomandi, et. al.
American Thoracic Society (ATS) Meeting, 2025 - Integrating Deep Learning and CT Radiomics to Predict COPD Mortality: A 10-year Survival Analysis
MFA Chaudhary, HA Awan, A Nakhmani, JM Reinhardt, S Bodduluri, SP Bhatt
American Thoracic Society (ATS) Meeting, 2025 - Comparison of Visual Reads for Emphysema and Bronchial Thickening on Low-dose Versus Standard-dose Computed Tomography
PP Manapragada, S Grumley, MU Aziz, HP Nath, C-Y Chiu, MFA Chaudhary, S Bodduluri, et. al.
American Thoracic Society (ATS) Meeting, 2025 - Uncovering Silent Zones in COPD: Mechanics of Normal Lung Foretell Emphysema Onset and Mortality
S Bodduluri, MFA Chaudhary, JM Reinhardt, A Nakhmani, SP Bhatt.
American Thoracic Society (ATS) Meeting, 2025 - Prediction of 5-Year Mortality in COPD Using Visual Measures of Structural Changes on Chest CT
MFA Chaudhary, H Nath, S Bodduluri, A Nakhmani, S Grumley, PP Manapragada, MU Aziz, et. al.
American Thoracic Society (ATS) Meeting, 2025 - Moving Beyond Air Trapping with Expiratory CT Radiomics: A Timely Reminder
MFA Chaudhary
Academic Radiology, 2025
Invited guest editorial - Lung Quantitative Computed Tomography Textures are Associated with Systemic Inflammation and Mortality in COPD
HA Awan, MFA Chaudhary, AD El-Sokkary, EA Hoffman, AP Comellas, J Guo, IZ Barjaktarevic, et. al.
Chest, 2025 - Deep learning estimation of small airways disease from inspiratory chest CT: clinical validation, repeatability, and associations with adverse clinical outcomes in COPD
MFA Chaudhary, HA Awan, SE Gerard, S Bodduluri, AP Comellas, IZ Barjaktarevic, RG Barr, et. al.
American Journal of Respiratory and Critical Care Medicine, 2025
Featured emerging investigator for the contribution
Editorial on this article by Dr. Peter M. Calverly - Computed tomography radiomics features predict change in lung density and rate of emphysema progression
P Saha, S Bodduluri, A Nakhmani, MFA Chaudhary, PRA Puchakayala, V Sthanam, et. al.
Annals of the American Thoracic Society, 2025 - Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation
MFA Chaudhary, JM Reinhardt, SE Gerard
SASHIMI-MICCAI, 2025 - Uncertainty-Aware Test-Time Adaptation for Inverse Consistent Diffeomorphic Lung Image Registration
MFA Chaudhary, SM Aguilera, A Nakhmani, JM Reinhardt, SP Bhatt, S Bodduluri
IEEE International Symposium on Biomedical Imaging (ISBI), 2025 - Association of ground-glass opacities with systemic inflammation and progression of emphysema
S Fortis, J Guo, P Nagpal, MFA Chaudhary, JD Newell Jr, SE Gerard, MK Han, et. al.,
American Journal of Respiratory and Critical Care Medicine, 2024 - Small Hinges That Swing Big Doors: Small Airways Obstruction and Death
MFA Chaudhary, S Bodduluri
Chest, 2024
Invited guest editorial - Towards robust radiomics and radiogenomics predictive models for brain tumor characterization
M Nadeem, A Shaheen, MFA Chaudhary, H Mohy-ud-Din
arXiv Preprint, 2024 - BronchIO: A Zero-shot Learning-based Tool for Pulmonary Airway Analyses
V Wu, V Sthanam, A Pudhota, A Nakhmani, MFA Chaudhary, JM Reinhardt, L Jololian, et. al.
American Thoracic Society (ATS) Meeting, 2024 - Deep Generative Learning Enables Prediction of Hyperpolarized Gas MR From CT
MFA Chaudhary, SB Fain, HA Awan, EA Hoffman, SE Gerard, LC Denlinger, JM Reinhardt
American Thoracic Society (ATS) Meeting, 2024 - LungViT: Ensembling Cascade of Texture Sensitive Hierarchical Vision Transformers for Cross-Volume Chest CT Image-to-Image Translation
MFA Chaudhary, SE Gerard, GE Christensen, CB Cooper, JD Schroeder, EA Hoffman, JM Reinhardt
IEEE Transactions on Medical Imaging, 2024 - Bridging the Task Barriers: Online Knowledge Distillation Across Tasks for Semi-supervised Mediastinal Segmentation in CT
MFA Chaudhary, SS Hosseini, RG Barr, JM Reinhardt, EA Hoffman, SE Gerard
MLMI-MICCAI, 2023
Nominated for best paper award - Radiomics for improved detection of chronic obstructive pulmonary disease in low-dose and standard-dose chest CT scans
PRA Puchakayala, VL Sthanam, ANakhmani, MFA Chaudhary, AK Puliyakote, JM Reinhardt, et. al.
Radiology, 2023 - Deep Residual Convolutional Network Predicts Future Severe Exacerbations of COPD in SPIROMICS
HA Awan, MFA Chaudhary, SE Gerard, AP Comellas, EA Hoffman, I Barjaktarevic, SP Bhatt, et. al.
American Thoracic Society (ATS) Meeting, 2023 - Direct Estimation of Regional Lung Volume Change from Paired and Single CT Images using Residual Regression Neural Network
SE Gerard, MFA Chaudhary, J Herrmann, GE Christensen, RSJ Estépar, JM Reinhardt, EA Hoffman
Medical Physics, 2023 - Predicting severe chronic obstructive pulmonary disease exacerbations using quantitative CT: a retrospective model development and external validation study
MFA Chaudhary, EA Hoffman, J Guo, AP Comellas, JD Newell Jr., P Nagpal, S Fortis, et. al.
The Lancet Digital Health, 2023
Editorial on this article by Drs. Makimoto and Kirby - Robust Measures of Image-Registration-Derived Lung Biomechanics in SPIROMICS
Y Pan, D Wang, MFA Chaudhary, W Shao, SE Gerard, OC Durumeric, SP Bhatt, et. al.
Journal of Imaging, 2022 - Novel QCT textures are associated with sRAGE and IL-6 in SPIROMICS
HA Awan, MFA Chaudhary, WW Labaki, J Guo, EA Hoffman, AP Comellas, IZ Barjaktarevic, et. al.
European Respiratory Society (ERS) Congress, 2022 - Association of increased chest CT density (ICTD) with clinical features and emphysema progression in ever smokers
S Fortis, J Guo, MFA Chaudhary, JD Newell, P Nagpal, SE Gerard, MK Han, et. al.
American Thoracic Society (ATS) Meeting, 2022 - Single volume lung biomechanics from chest computed tomography using a mode preserving generative adversarial network
MFA Chaudhary, SE Gerard, D Wang, GE Christensen, CB Cooper, JD Schroeder, EA Hoffman, JM Reinhardt
IEEE International Symposium on Biomedical Imaging (ISBI), 2022 - CT texture features predict severe COPD exacerbations in SPIROMICS
MFA Chaudhary, EA Hoffman, AP Comellas, J Guo, S Fortis, S Bodduluri, F Abtin, et. al.
American Thoracic Society (ATS) Meeting, 2021 - TISON: a next-generation multi-scale modeling theatre for in silico systems oncology
MN Gondal, MU Sultan, A Arif, A Rehman, HA Awan, Z Arshad, W Ahmed, MFA Chaudhary, et. al.
bioRxiv - CSHL 2021 - Registration-invariant biomechanical features for disease staging of COPD in SPIROMICS
MFA Chaudhary, Y Pan, D Wang, S Bodduluri, SP Bhatt, AP Comellas, EA Hoffman, et. al.
TIA-MICCAI, 2020 - ATLANTIS - Attractor landscape analysis toolbox for cell fate discovery and reprogramming
OS Shah, MFA Chaudhary, HA Awan, F Fatima, Z Arshad, B Amina, M Ahmed, et. al.
Nature Scientific Reports, 2018
